Electrode with Nerve Model tutorial
-
I'd really like to be able to follow along with the "Electrode with Nerve Model" tutorial but it does not seem to be available as a tutorial in the lite version, despite being listed in the S4L lite tutorials instructions list. Does anyone know where I can find the necessary files to run this tutorial? Was the original tutorial removed from S4L lite?
-
Hi, just wanted to update you regarding this tutorial. It should now be available on lite. We are working on some improvements with this tutorial which will released in v9.
@halder Thanks for this. Just going through it now, seems like there might be some errors to address:
- The size and positioning of the block do not enclose the imported electrode model as specified, based on the image included it seems like it should.
- In part 3 in the Materials section, "Top 1" does not seem to be available from the electrode model. Also, the instruction says to grab these from the Electrode folder. This could be made more clear.
- "Tissue" does not seem to be available in part 4 of the same section.
- "Body 6" has a duplicate, "EL 1" is not available in part 5.
Without these settings, it is unclear if the rest of the simulation really works. When trying to run it, I receive this error:
[INFO] [XCore.CLog] Computing Neuron Simulations
[ERROR] [XCore.CLog] Can't open HDF5 file '/home/smu/work/workspace/Electrode with Nerve Model.smash_Results/616625e9-0a70-4cdc-9c4b-b709b7eeae57_Output.h5'.
-
Hi @cbenj33 we are aware of the inconsistencies (we have changed the position of the nerve and electrode, which will be part of the next release happening soon). For now, I am emailing you the pdf version of this tutorial documentation and explanations regarding the errors.
