Hey there,
I am not sure if this will fix your issue, but I can provide you with a piece of code that I used to apply material settings to the tissues in my simulations:
# dictionary containing all tissue names and entities in the simulation:
all_tissues_present = {}
if 'Bone_cortical' in all_entities:
print('Bone assigned')
entity_bone1 = all_entities["Bone_cortical"]
all_tissues_present["Bone_cortical"] = entity_bone1
# Dictionary containing material properties such as conductivity
tissue_conductivities = {
'Scalp': [0.439, 1],
'Cerebrum_white_matter': [0.348, 10],
'Cerebrum_grey_matter': [0.419, 9],
'Cerebrospinal_fluid': [1.88, 8],
'Bone_cortical': [0.00645, 3],
}
# Code to assign material settings to the correct tissues. Using the dictionaries above this can then be done in a for-loop:
for tissue_name, tissue_entity in all_tissues_present.items():
material_settings = emlf.MaterialSettings()
components = [tissue_entity]
material_settings.Name = tissue_name
material_settings.ElectricProps.Conductivity =
tissue_conductivities[tissue_name][0], Unit("S/m")
simulation.Add(material_settings, components)
I hope this helps and wish you a very nice day.
Best